03:51:26.496 INFO [main, Indexer.java:562] - Scanning for repositories... 03:51:35.627 WARN [main, RepositoryFactory.java:92] - BazaarRepository not working (missing binaries?) '/data/opengrok/stage2/src/opengrok-jel/testdata/repositories/bazaar' 03:51:35.895 WARN [main, RepositoryFactory.java:92] - BazaarRepository not working (missing binaries?) '/data/opengrok/stage2/src/opengrok/testdata/repositories/bazaar' 03:51:43.718 WARN [main, RepositoryFactory.java:92] - BazaarRepository not working (missing binaries?) '/data/opengrok/stage2/src/opengrok-jel/testdata/repositories/bazaar' 03:51:43.912 WARN [main, RepositoryFactory.java:92] - BazaarRepository not working (missing binaries?) '/data/opengrok/stage2/src/opengrok/testdata/repositories/bazaar' 03:51:43.967 INFO [main, Indexer.java:566] - Done (17s) 03:51:43.970 INFO [main, Indexer.java:674] - Writing configuration to '/data/opengrok/etc/configuration.xml' 03:51:44.230 INFO [main, Indexer.java:676] - Done. 03:51:44.230 INFO [main, Indexer.java:680] - Generating history cache for all repositories ... 03:51:45.573 WARN [pool-2-thread-8, SubversionHistoryParser.java:190] - An error occurred while parsing the command output (xml): XML document structures must start and end within the same entity. 03:51:45.574 WARN [pool-2-thread-8, Executor.java:199] - Non-zero exit status 1 from command [[/usr/bin/svn, log, --trust-server-cert, --non-interactive, --config-dir=/data/opengrok/.subversion, --xml, -v, ]] in directory '/data/opengrok/stage2/src/gf-3.1/src/metainf-services': svn: OPTIONS of 'https://svn.java.net/svn/metainf-services~svn/tags/metainf-services-1.1': authorization failed: Could not authenticate to server: rejected Basic challenge (https://svn.java.net) 03:51:45.575 WARN [pool-2-thread-8, HistoryGuru.java:454] - An error occured while creating cache for '/data/opengrok/stage2/src/gf-3.1/src/metainf-services' (SubversionRepository): Failed to get history for '/data/opengrok/stage2/src/gf-3.1/src/metainf-services' - Exit code 1 03:51:48.180 WARN [pool-2-thread-9, HistoryGuru.java:465] - Skipping creation of historycache of BazaarRepository repository in '/data/opengrok/stage2/src/opengrok-jel/testdata/repositories/bazaar': Missing SCM dependencies? 03:51:56.089 WARN [pool-2-thread-14, HistoryGuru.java:465] - Skipping creation of historycache of BazaarRepository repository in '/data/opengrok/stage2/src/opengrok/testdata/repositories/bazaar': Missing SCM dependencies? 03:51:56.731 WARN [pool-2-thread-13, SubversionHistoryParser.java:190] - An error occurred while parsing the command output (xml): XML document structures must start and end within the same entity. 03:51:56.732 WARN [pool-2-thread-13, Executor.java:199] - Non-zero exit status 1 from command [[/usr/bin/svn, log, --trust-server-cert, --non-interactive, --config-dir=/data/opengrok/.subversion, --xml, -v, -r, BASE:34607, ]] in directory '/data/opengrok/stage2/src/gf-3.1/src/felix.org.osgi.compendium-1.0.0': svn: Server sent unexpected return value (502 Proxy Error) in response to OPTIONS request for 'https://svn.java.net/svn/glassfish~svn/trunk/external/modules/felix.org.osgi.compendium/1.0.0' 03:51:56.733 INFO [pool-2-thread-13, Repository.java:216] - Failed to get partial history. Attempting to recreate the history cache from scratch (Failed to get history for '/data/opengrok/stage2/src/gf-3.1/src/felix.org.osgi.compendium-1.0.0' - Exit code 1) 03:52:12.731 INFO [main, Indexer.java:682] - Done. 03:52:12.732 INFO [main, Indexer.java:702] - Start indexing ... 03:52:13.812 INFO [pool-3-thread-9, IndexDatabase.java:593] - Skipped file '/opengrok/testdata/sources/bug3430/truncated' because the analyzer didn't understand it. 03:52:13.812 INFO [pool-3-thread-10, IndexDatabase.java:593] - Skipped file '/opengrok-jel/testdata/sources/bug3430/truncated' because the analyzer didn't understand it. 03:52:13.819 DEBUG [pool-3-thread-10, IndexDatabase.java:596] - addFile java.lang.IllegalArgumentException: null at java.nio.Buffer.position(Buffer.java:236) ~[na:1.7.0_03] at org.opensolaris.opengrok.analysis.executables.ELFAnalyzer.parseELF(ELFAnalyzer.java:113) ~[opengrok.jar:na] at org.opensolaris.opengrok.analysis.executables.ELFAnalyzer.analyze(ELFAnalyzer.java:93) ~[opengrok.jar:na] at org.opensolaris.opengrok.analysis.AnalyzerGuru.getDocument(AnalyzerGuru.java:265) ~[opengrok.jar:na] at org.opensolaris.opengrok.index.IndexDatabase.addFile(IndexDatabase.java:591) [opengrok.jar:na] at org.opensolaris.opengrok.index.IndexDatabase.indexDown(IndexDatabase.java:826) [opengrok.jar:na] at org.opensolaris.opengrok.index.IndexDatabase.indexDown(IndexDatabase.java:794) [opengrok.jar:na] at org.opensolaris.opengrok.index.IndexDatabase.indexDown(IndexDatabase.java:794) [opengrok.jar:na] at org.opensolaris.opengrok.index.IndexDatabase.indexDown(IndexDatabase.java:794) [opengrok.jar:na] at org.opensolaris.opengrok.index.IndexDatabase.update(IndexDatabase.java:373) [opengrok.jar:na] at org.opensolaris.opengrok.index.IndexDatabase$1.run(IndexDatabase.java:164) [opengrok.jar:na] at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:471) [na:1.7.0_03] at java.util.concurrent.FutureTask$Sync.innerRun(FutureTask.java:334) [na:1.7.0_03] at java.util.concurrent.FutureTask.run(FutureTask.java:166) [na:1.7.0_03] at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1110) [na:1.7.0_03] at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:603) [na:1.7.0_03] at java.lang.Thread.run(Thread.java:722) [na:1.7.0_03] 03:52:13.819 DEBUG [pool-3-thread-9, IndexDatabase.java:596] - addFile java.lang.IllegalArgumentException: null at java.nio.Buffer.position(Buffer.java:236) ~[na:1.7.0_03] at org.opensolaris.opengrok.analysis.executables.ELFAnalyzer.parseELF(ELFAnalyzer.java:113) ~[opengrok.jar:na] at org.opensolaris.opengrok.analysis.executables.ELFAnalyzer.analyze(ELFAnalyzer.java:93) ~[opengrok.jar:na] at org.opensolaris.opengrok.analysis.AnalyzerGuru.getDocument(AnalyzerGuru.java:265) ~[opengrok.jar:na] at org.opensolaris.opengrok.index.IndexDatabase.addFile(IndexDatabase.java:591) [opengrok.jar:na] at org.opensolaris.opengrok.index.IndexDatabase.indexDown(IndexDatabase.java:826) [opengrok.jar:na] at org.opensolaris.opengrok.index.IndexDatabase.indexDown(IndexDatabase.java:794) [opengrok.jar:na] at org.opensolaris.opengrok.index.IndexDatabase.indexDown(IndexDatabase.java:794) [opengrok.jar:na] at org.opensolaris.opengrok.index.IndexDatabase.indexDown(IndexDatabase.java:794) [opengrok.jar:na] at org.opensolaris.opengrok.index.IndexDatabase.update(IndexDatabase.java:373) [opengrok.jar:na] at org.opensolaris.opengrok.index.IndexDatabase$1.run(IndexDatabase.java:164) [opengrok.jar:na] at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:471) [na:1.7.0_03] at java.util.concurrent.FutureTask$Sync.innerRun(FutureTask.java:334) [na:1.7.0_03] at java.util.concurrent.FutureTask.run(FutureTask.java:166) [na:1.7.0_03] at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1110) [na:1.7.0_03] at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:603) [na:1.7.0_03] at java.lang.Thread.run(Thread.java:722) [na:1.7.0_03] 03:52:19.070 INFO [pool-3-thread-6, IndexDatabase.java:593] - Skipped file '/jdk7/jdk/test/java/lang/ClassLoader/findSystemClass/java/lang/Object.class' because the analyzer didn't understand it. 03:52:19.071 DEBUG [pool-3-thread-6, IndexDatabase.java:596] - addFile org.apache.bcel.classfile.ClassFormatException: /jdk7/jdk/test/java/lang/ClassLoader/findSystemClass/java/lang/Object.class is not a Java .class file at org.apache.bcel.classfile.ClassParser.readID(ClassParser.java:251) ~[bcel-5.2.jar:5.2] at org.apache.bcel.classfile.ClassParser.parse(ClassParser.java:131) ~[bcel-5.2.jar:5.2] at org.opensolaris.opengrok.analysis.executables.JavaClassAnalyzer.analyze(JavaClassAnalyzer.java:95) ~[opengrok.jar:na] at org.opensolaris.opengrok.analysis.AnalyzerGuru.getDocument(AnalyzerGuru.java:265) ~[opengrok.jar:na] at org.opensolaris.opengrok.index.IndexDatabase.addFile(IndexDatabase.java:591) [opengrok.jar:na] at org.opensolaris.opengrok.index.IndexDatabase.indexDown(IndexDatabase.java:826) [opengrok.jar:na] at org.opensolaris.opengrok.index.IndexDatabase.indexDown(IndexDatabase.java:794) [opengrok.jar:na] at org.opensolaris.opengrok.index.IndexDatabase.indexDown(IndexDatabase.java:794) [opengrok.jar:na] at org.opensolaris.opengrok.index.IndexDatabase.indexDown(IndexDatabase.java:794) [opengrok.jar:na] at org.opensolaris.opengrok.index.IndexDatabase.indexDown(IndexDatabase.java:794) [opengrok.jar:na] at org.opensolaris.opengrok.index.IndexDatabase.indexDown(IndexDatabase.java:794) [opengrok.jar:na] at org.opensolaris.opengrok.index.IndexDatabase.indexDown(IndexDatabase.java:794) [opengrok.jar:na] at org.opensolaris.opengrok.index.IndexDatabase.indexDown(IndexDatabase.java:794) [opengrok.jar:na] at org.opensolaris.opengrok.index.IndexDatabase.indexDown(IndexDatabase.java:794) [opengrok.jar:na] at org.opensolaris.opengrok.index.IndexDatabase.update(IndexDatabase.java:373) [opengrok.jar:na] at org.opensolaris.opengrok.index.IndexDatabase$1.run(IndexDatabase.java:164) [opengrok.jar:na] at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:471) [na:1.7.0_03] at java.util.concurrent.FutureTask$Sync.innerRun(FutureTask.java:334) [na:1.7.0_03] at java.util.concurrent.FutureTask.run(FutureTask.java:166) [na:1.7.0_03] at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1110) [na:1.7.0_03] at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:603) [na:1.7.0_03] at java.lang.Thread.run(Thread.java:722) [na:1.7.0_03] 03:52:20.653 INFO [pool-3-thread-6, IndexDatabase.java:593] - Skipped file '/jdk7/jdk/test/tools/pack200/badattr.jar' because the analyzer didn't understand it. 03:52:20.654 DEBUG [pool-3-thread-6, IndexDatabase.java:596] - addFile org.apache.bcel.classfile.ClassFormatException: Invalid constant pool reference: 1792. Constant pool size is: 13 at org.apache.bcel.classfile.ConstantPool.getConstant(ConstantPool.java:219) ~[bcel-5.2.jar:5.2] at org.apache.bcel.classfile.ConstantPool.getConstant(ConstantPool.java:238) ~[bcel-5.2.jar:5.2] at org.apache.bcel.classfile.Attribute.readAttribute(Attribute.java:131) ~[bcel-5.2.jar:5.2] at org.apache.bcel.classfile.ClassParser.readAttributes(ClassParser.java:189) ~[bcel-5.2.jar:5.2] at org.apache.bcel.classfile.ClassParser.parse(ClassParser.java:147) ~[bcel-5.2.jar:5.2] at org.opensolaris.opengrok.analysis.executables.JavaClassAnalyzer.analyze(JavaClassAnalyzer.java:95) ~[opengrok.jar:na] at org.opensolaris.opengrok.analysis.executables.JarAnalyzer.analyze(JarAnalyzer.java:72) ~[opengrok.jar:na] at org.opensolaris.opengrok.analysis.AnalyzerGuru.getDocument(AnalyzerGuru.java:265) ~[opengrok.jar:na] at org.opensolaris.opengrok.index.IndexDatabase.addFile(IndexDatabase.java:591) [opengrok.jar:na] at org.opensolaris.opengrok.index.IndexDatabase.indexDown(IndexDatabase.java:826) [opengrok.jar:na] at org.opensolaris.opengrok.index.IndexDatabase.indexDown(IndexDatabase.java:794) [opengrok.jar:na] at org.opensolaris.opengrok.index.IndexDatabase.indexDown(IndexDatabase.java:794) [opengrok.jar:na] at org.opensolaris.opengrok.index.IndexDatabase.indexDown(IndexDatabase.java:794) [opengrok.jar:na] at org.opensolaris.opengrok.index.IndexDatabase.indexDown(IndexDatabase.java:794) [opengrok.jar:na] at org.opensolaris.opengrok.index.IndexDatabase.update(IndexDatabase.java:373) [opengrok.jar:na] at org.opensolaris.opengrok.index.IndexDatabase$1.run(IndexDatabase.java:164) [opengrok.jar:na] at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:471) [na:1.7.0_03] at java.util.concurrent.FutureTask$Sync.innerRun(FutureTask.java:334) [na:1.7.0_03] at java.util.concurrent.FutureTask.run(FutureTask.java:166) [na:1.7.0_03] at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1110) [na:1.7.0_03] at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:603) [na:1.7.0_03] at java.lang.Thread.run(Thread.java:722) [na:1.7.0_03] 03:52:20.659 INFO [pool-3-thread-6, IndexDatabase.java:593] - Skipped file '/jdk7/jdk/test/tools/pack200/dyn.jar' because the analyzer didn't understand it. 03:52:20.660 DEBUG [pool-3-thread-6, IndexDatabase.java:596] - addFile org.apache.bcel.classfile.ClassFormatException: Invalid byte tag in constant pool: 15 at org.apache.bcel.classfile.Constant.readConstant(Constant.java:146) ~[bcel-5.2.jar:5.2] at org.apache.bcel.classfile.ConstantPool.(ConstantPool.java:67) ~[bcel-5.2.jar:5.2] at org.apache.bcel.classfile.ClassParser.readConstantPool(ClassParser.java:222) ~[bcel-5.2.jar:5.2] at org.apache.bcel.classfile.ClassParser.parse(ClassParser.java:136) ~[bcel-5.2.jar:5.2] at org.opensolaris.opengrok.analysis.executables.JavaClassAnalyzer.analyze(JavaClassAnalyzer.java:95) ~[opengrok.jar:na] at org.opensolaris.opengrok.analysis.executables.JarAnalyzer.analyze(JarAnalyzer.java:72) ~[opengrok.jar:na] at org.opensolaris.opengrok.analysis.AnalyzerGuru.getDocument(AnalyzerGuru.java:265) ~[opengrok.jar:na] at org.opensolaris.opengrok.index.IndexDatabase.addFile(IndexDatabase.java:591) [opengrok.jar:na] at org.opensolaris.opengrok.index.IndexDatabase.indexDown(IndexDatabase.java:826) [opengrok.jar:na] at org.opensolaris.opengrok.index.IndexDatabase.indexDown(IndexDatabase.java:794) [opengrok.jar:na] at org.opensolaris.opengrok.index.IndexDatabase.indexDown(IndexDatabase.java:794) [opengrok.jar:na] at org.opensolaris.opengrok.index.IndexDatabase.indexDown(IndexDatabase.java:794) [opengrok.jar:na] at org.opensolaris.opengrok.index.IndexDatabase.indexDown(IndexDatabase.java:794) [opengrok.jar:na] at org.opensolaris.opengrok.index.IndexDatabase.update(IndexDatabase.java:373) [opengrok.jar:na] at org.opensolaris.opengrok.index.IndexDatabase$1.run(IndexDatabase.java:164) [opengrok.jar:na] at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:471) [na:1.7.0_03] at java.util.concurrent.FutureTask$Sync.innerRun(FutureTask.java:334) [na:1.7.0_03] at java.util.concurrent.FutureTask.run(FutureTask.java:166) [na:1.7.0_03] at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1110) [na:1.7.0_03] at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:603) [na:1.7.0_03] at java.lang.Thread.run(Thread.java:722) [na:1.7.0_03] 03:52:20.739 INFO [pool-3-thread-6, IndexDatabase.java:593] - Skipped file '/jdk7/jdk/test/tools/pack200/pack200-verifier/data/golden.jar' because the analyzer didn't understand it. 03:52:20.740 DEBUG [pool-3-thread-6, IndexDatabase.java:596] - addFile org.apache.bcel.classfile.ClassFormatException: /jdk7/jdk/test/tools/pack200/pack200-verifier/data/golden.jar is not a Java .class file at org.apache.bcel.classfile.ClassParser.readID(ClassParser.java:251) ~[bcel-5.2.jar:5.2] at org.apache.bcel.classfile.ClassParser.parse(ClassParser.java:131) ~[bcel-5.2.jar:5.2] at org.opensolaris.opengrok.analysis.executables.JavaClassAnalyzer.analyze(JavaClassAnalyzer.java:95) ~[opengrok.jar:na] at org.opensolaris.opengrok.analysis.executables.JarAnalyzer.analyze(JarAnalyzer.java:72) ~[opengrok.jar:na] at org.opensolaris.opengrok.analysis.AnalyzerGuru.getDocument(AnalyzerGuru.java:265) ~[opengrok.jar:na] at org.opensolaris.opengrok.index.IndexDatabase.addFile(IndexDatabase.java:591) [opengrok.jar:na] at org.opensolaris.opengrok.index.IndexDatabase.indexDown(IndexDatabase.java:826) [opengrok.jar:na] at org.opensolaris.opengrok.index.IndexDatabase.indexDown(IndexDatabase.java:794) [opengrok.jar:na] at org.opensolaris.opengrok.index.IndexDatabase.indexDown(IndexDatabase.java:794) [opengrok.jar:na] at org.opensolaris.opengrok.index.IndexDatabase.indexDown(IndexDatabase.java:794) [opengrok.jar:na] at org.opensolaris.opengrok.index.IndexDatabase.indexDown(IndexDatabase.java:794) [opengrok.jar:na] at org.opensolaris.opengrok.index.IndexDatabase.indexDown(IndexDatabase.java:794) [opengrok.jar:na] at org.opensolaris.opengrok.index.IndexDatabase.indexDown(IndexDatabase.java:794) [opengrok.jar:na] at org.opensolaris.opengrok.index.IndexDatabase.update(IndexDatabase.java:373) [opengrok.jar:na] at org.opensolaris.opengrok.index.IndexDatabase$1.run(IndexDatabase.java:164) [opengrok.jar:na] at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:471) [na:1.7.0_03] at java.util.concurrent.FutureTask$Sync.innerRun(FutureTask.java:334) [na:1.7.0_03] at java.util.concurrent.FutureTask.run(FutureTask.java:166) [na:1.7.0_03] at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1110) [na:1.7.0_03] at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:603) [na:1.7.0_03] at java.lang.Thread.run(Thread.java:722) [na:1.7.0_03] 03:52:23.421 INFO [pool-3-thread-3, IndexDatabase.java:593] - Skipped file '/gf-3.1/src/javahelp/jhMaster/JavaHelp/demos/jhdemo/sunw/demo/jhdemo/JHLauncher.class' because the analyzer didn't understand it. 03:52:23.422 DEBUG [pool-3-thread-3, IndexDatabase.java:596] - addFile java.io.EOFException: null at java.io.DataInputStream.readInt(DataInputStream.java:392) ~[na:1.7.0_03] at org.apache.bcel.classfile.ClassParser.readID(ClassParser.java:250) ~[bcel-5.2.jar:5.2] at org.apache.bcel.classfile.ClassParser.parse(ClassParser.java:131) ~[bcel-5.2.jar:5.2] at org.opensolaris.opengrok.analysis.executables.JavaClassAnalyzer.analyze(JavaClassAnalyzer.java:95) ~[opengrok.jar:na] at org.opensolaris.opengrok.analysis.AnalyzerGuru.getDocument(AnalyzerGuru.java:265) ~[opengrok.jar:na] at org.opensolaris.opengrok.index.IndexDatabase.addFile(IndexDatabase.java:591) [opengrok.jar:na] at org.opensolaris.opengrok.index.IndexDatabase.indexDown(IndexDatabase.java:826) [opengrok.jar:na] at org.opensolaris.opengrok.index.IndexDatabase.indexDown(IndexDatabase.java:794) [opengrok.jar:na] at org.opensolaris.opengrok.index.IndexDatabase.indexDown(IndexDatabase.java:794) [opengrok.jar:na] at org.opensolaris.opengrok.index.IndexDatabase.indexDown(IndexDatabase.java:794) [opengrok.jar:na] at org.opensolaris.opengrok.index.IndexDatabase.indexDown(IndexDatabase.java:794) [opengrok.jar:na] at org.opensolaris.opengrok.index.IndexDatabase.indexDown(IndexDatabase.java:794) [opengrok.jar:na] at org.opensolaris.opengrok.index.IndexDatabase.indexDown(IndexDatabase.java:794) [opengrok.jar:na] at org.opensolaris.opengrok.index.IndexDatabase.indexDown(IndexDatabase.java:794) [opengrok.jar:na] at org.opensolaris.opengrok.index.IndexDatabase.indexDown(IndexDatabase.java:794) [opengrok.jar:na] at org.opensolaris.opengrok.index.IndexDatabase.indexDown(IndexDatabase.java:794) [opengrok.jar:na] at org.opensolaris.opengrok.index.IndexDatabase.update(IndexDatabase.java:373) [opengrok.jar:na] at org.opensolaris.opengrok.index.IndexDatabase$1.run(IndexDatabase.java:164) [opengrok.jar:na] at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:471) [na:1.7.0_03] at java.util.concurrent.FutureTask$Sync.innerRun(FutureTask.java:334) [na:1.7.0_03] at java.util.concurrent.FutureTask.run(FutureTask.java:166) [na:1.7.0_03] at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1110) [na:1.7.0_03] at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:603) [na:1.7.0_03] at java.lang.Thread.run(Thread.java:722) [na:1.7.0_03] 03:52:30.341 INFO [main, Indexer.java:776] - Done. 03:52:30.341 INFO [main, Indexer.java:782] - Sending configuration to localhost:2424 03:52:30.430 INFO [main, Indexer.java:802] - Done.